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Task 6: Accessing genotype data from Genolink

Search by Marker IDs:
AVRIG03881
AVRIG03883
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Task 14: Seaching for an existing marker in Pretzel

50K markers:
JHI-Hv50k-2016-441289
JHI-Hv50k-2016-445855
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Task 17: Load AGG genotype data for barley

Accession ID for Osiris:
AGG411853BARL
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Task 21: Search for the Nud gene in the Morex v3 genome using BLAST

Gene ID for NUD gene feature search:
HORVU.MOREX.r3.7HG0719680

Selection of Genotype IDs for barley accessions containing the term 'naked' in their Accession name in Genolink
AGG407276BARL1-B00019-8-28
AGG423036BARL2-B00025-12-78
AGG400439BARL1-B00015-3-55
AGG400449BARL2-B00015-3-08
AGG407974BARL1-B00020-1-41
AGG423021BARL2-B00025-12-46
AGG423020BARL2-B00005-12-75
AGG407968BARL1-B00020-1-17
AGG423009BARL2-B00005-12-35
AGG423006BARL2-B00025-12-06
AGG402710BARL1-B00016-7-11
AGG401049BARL1-B00001-8-49
AGG407997BARL1-B00020-1-50
AGG407964BARL1-B00019-12-88
AGG423041BARL2-B00030-7-84
AGG423037BARL2-B00025-12-86
AGG407978BARL1-B00020-1-65
AGG407984BARL1-B00020-1-10
AGG423008BARL2-B00005-12-27
AGG408176BARL1-B00002-11-09
AGG423035BARL2-B00003-7-20
AGG495059BARL1-B00023-7-20
AGG401507BARL1-B00001-9-36
AGG408191BARL1-B00002-11-57
AGG408190BARL1-B00002-11-49
AGG407986BARL1-B00027-4-34
AGG401796BARL1-B00001-10-74
AGG407979BARL1-B00020-1-73
AGG407725BARL1-B00027-3-31
AGG423022BARL2-B00005-12-83
AGG402251BARL1-B00001-11-29
AGG423026BARL3-B00003-7-12
AGG423027BARL2-B00025-12-62
AGG407969BARL1-B00027-4-10
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Task 23: DNA sequence of the NUD gene

>ENA|AKF40403|AKF40403.1 Hordeum vulgare NUD
ATGGTACAGTCCAAGAAGAAGTTTCGCGGCGTCAGGCAGCGCCACTGGGGCTCCTGGGTCTCCGAGATCAGGCATCCTCTCCTGAAGAGGAGGGTGTGGTTGGGCACCTTTGAGACGGCGGAGGAGGCTGCGCGGGCGTACGATGAGGCTGCCATCCTGATGAGCGGGCGCAACGCCAAGACCAACTTCCCCGTACCGAGGAGTGCCAACGGGGAGATCATCGTCGCCCCAGCAGCAGCAGCACGGGACATTCGCGGTGGCGTTGGCTCGTCGTCCTCCGGGGCCGCCGGCGCCAGCAGCCTGTCACAGATCCTCAGCGCCAAGCTCCGCAAGTGCTGCAAGACACCGTCCCCGTCCCTCACCTGCCTCCGCCTCGACACCGAGAAGTCCCACATTGGCGTCTGGCAGAAGCGCGCGGGTGCCCGTGCCGACTCCAGCTGGGACATGACCGTCGAGCTCAACAAGGAGCCGGCCGCAGCGGCACCACCAACGCCCAGCGACAGCACGGTGTCGGCGACTCCTTCCTCGTCCACGTCCACGTCCACAACGGGCTCCCCACCGGAGGCAATGGAGGACGAAGAGAGGATCGCGCTGCAGATGATAGAGGAGCTGCTGAGCAGGAGCAGCCCGGCTTCGCCGTCACATGGGCTGCTGCACGGTGAAGAAGGCAGCCTCCTCATCTGA
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